WebEasyQC software version 23.8 was used to clean and harmonize the data , and single-nucleotide polymorphisms (SNPs) with a minor allele frequency <0.01 and imputation score <0.4 were ... A sensitivity analysis using the GCTA software COJO module was used to verify that the independent SNPs selected were also conditionally independent of ... WebPartners with the Clinical Program Leader (CPL), Clinical Operations Head (COH), Global Clinical Trial Assistant (GCTA MAO), ... Strong IT skills in appropriate software and company systems.
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WebOct 15, 2024 · The inbreeding coefficient was estimated through the -ibc command implemented in GCTA software, which returns three different inbreeding estimations, F GRM, F HOM and F UNI. F GRM, calculated following VanRaden (2008), was equivalent to the estimate of an individual’s additive relationship to itself; ... http://gusevlab.org/projects/fusion/ biofourmis care fl pllc
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WebApr 11, 2024 · We used the Fisher-scoring algorithm implemented in the GREML module of GCTA (v. 1.92.1; ) ... Raw sequence data were trimmed and pruned for low-quality bases and reads with default parameter settings of the fastp software (v. 0.20.0; ) and subsequently mapped to the Sscrofa11.1 reference genome using the mem-algorithm of the BWA ... WebGCTA. GCTA (Genome-wide Complex Trait Analysis) is a software package, which was initially developed to estimate the proportion of phenotypic variance explained by all … WebSep 29, 2024 · Genetic correlation can be estimated from genotype- and mixed-model-based methods available in several software packages. For example, GCTA is able to perform a … daikin india chennai office